Package: mskcc.oncotree 0.1.1
mskcc.oncotree: Interface to the 'OncoTree' API
Programmatic access to 'OncoTree' API <http://oncotree.mskcc.org/>. Get access to tumor main types, identifiers and utility routines to map across to other tumor classification systems.
Authors:
mskcc.oncotree_0.1.1.tar.gz
mskcc.oncotree_0.1.1.zip(r-4.5)mskcc.oncotree_0.1.1.zip(r-4.4)mskcc.oncotree_0.1.1.zip(r-4.3)
mskcc.oncotree_0.1.1.tgz(r-4.4-any)mskcc.oncotree_0.1.1.tgz(r-4.3-any)
mskcc.oncotree_0.1.1.tar.gz(r-4.5-noble)mskcc.oncotree_0.1.1.tar.gz(r-4.4-noble)
mskcc.oncotree_0.1.1.tgz(r-4.4-emscripten)mskcc.oncotree_0.1.1.tgz(r-4.3-emscripten)
mskcc.oncotree.pdf |mskcc.oncotree.html✨
mskcc.oncotree/json (API)
NEWS
# Install 'mskcc.oncotree' in R: |
install.packages('mskcc.oncotree', repos = c('https://maialab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/maialab/mskcc.oncotree/issues
Last updated 2 years agofrom:03f30b9886. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 15 2024 |
R-4.5-win | OK | Aug 15 2024 |
R-4.5-linux | OK | Aug 15 2024 |
R-4.4-win | OK | Aug 15 2024 |
R-4.4-mac | OK | Aug 15 2024 |
R-4.3-win | OK | Aug 15 2024 |
R-4.3-mac | OK | Aug 15 2024 |
Exports:%>%get_tumor_typesget_versionsmap_ontology_codenci_to_oncotreeoncotree_to_ncioncotree_to_umlsopen_in_nci_thesaurusread_ontology_mappingsumls_to_oncotree
Dependencies:askpassassertthatbitbit64cachemclicliprcpp11crayoncurldplyrfansifastmapgenericsgluehmshttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangstringistringrsystibbletidyjsontidyrtidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Get tumor types | get_tumor_types |
Get OncoTree versions | get_versions |
Map tumor types across ontologies | map_ontology_code |
Map NCI to OncoTree codes | nci_to_oncotree |
Map OncoTree to NCIt codes | oncotree_to_nci |
Map OncoTree to UMLS codes | oncotree_to_umls |
Browse the NCIt | open_in_nci_thesaurus |
Map UMLS to OncoTree codes | umls_to_oncotree |