Package: mskcc.oncotree 0.1.1

Ramiro Magno

mskcc.oncotree: Interface to the 'OncoTree' API

Programmatic access to 'OncoTree' API <http://oncotree.mskcc.org/>. Get access to tumor main types, identifiers and utility routines to map across to other tumor classification systems.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

mskcc.oncotree_0.1.1.tar.gz
mskcc.oncotree_0.1.1.zip(r-4.5)mskcc.oncotree_0.1.1.zip(r-4.4)mskcc.oncotree_0.1.1.zip(r-4.3)
mskcc.oncotree_0.1.1.tgz(r-4.5-any)mskcc.oncotree_0.1.1.tgz(r-4.4-any)mskcc.oncotree_0.1.1.tgz(r-4.3-any)
mskcc.oncotree_0.1.1.tar.gz(r-4.5-noble)mskcc.oncotree_0.1.1.tar.gz(r-4.4-noble)
mskcc.oncotree_0.1.1.tgz(r-4.4-emscripten)mskcc.oncotree_0.1.1.tgz(r-4.3-emscripten)
mskcc.oncotree.pdf |mskcc.oncotree.html✨
mskcc.oncotree/json (API)
NEWS

# Install 'mskcc.oncotree' in R:
install.packages('mskcc.oncotree', repos = c('https://maialab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/maialab/mskcc.oncotree/issues

Pkgdown site:https://maialab.org

On CRAN:

Conda:

3.48 score 6 stars 7 scripts 154 downloads 10 exports 43 dependencies

Last updated 2 years agofrom:03f30b9886. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 13 2025
R-4.5-winOKMar 13 2025
R-4.5-macOKMar 13 2025
R-4.5-linuxOKMar 13 2025
R-4.4-winOKMar 13 2025
R-4.4-macOKMar 13 2025
R-4.4-linuxOKMar 13 2025
R-4.3-winOKMar 13 2025
R-4.3-macOKMar 13 2025

Exports:%>%get_tumor_typesget_versionsmap_ontology_codenci_to_oncotreeoncotree_to_ncioncotree_to_umlsopen_in_nci_thesaurusread_ontology_mappingsumls_to_oncotree

Dependencies:askpassassertthatbitbit64cachemclicliprcpp11crayoncurldplyrfansifastmapgenericsgluehmshttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangstringistringrsystibbletidyjsontidyrtidyselecttzdbutf8vctrsvroomwithr