NEWS

agvgd 0.1.2 (2022-09-10)

Fixed a bug with read_substitutions() that would not parse positions correctly.
Added a new substitutions example file lee2010_sub.txt.
Added a new function read_agvgdweb_results() aimed at developers.

The main function agvgd() had an alias, align_agvgd(), which is now removed to avoid confusion.
A few more functions are now exported allowing access to low-level routines: gd(), gv() and cpv_ranges().
alignment_pos_to_residue_pos() has been renamed to poi_to_res() and residue_pos_to_alignment_pos() to res_to_poi().
Code coverage is now tracked.
Added a NEWS.md file to track changes to the package.